The order of the ’NM_runY’ directories corresponds to the order of the modelfiles given on the command line. For each model file specified on the command line there will be one ’NM_runY’ directory in which the actual 1 In the run directory you find a few subdirectories named ’NM_runY’. The run directory also contains a raw_results csv-file, a comma-separated file with summary information about minimization status, run time, ofv, parameter estimates etc. If you need to access any special files you can find them inside the run directory. When the NONMEM runs are finished, output and table files will be copied to the directory where execute started in which means that you can normaly ignore the run directory. Example execute -threads=2 -retries=5 run1.mod The name of the directory can be changed with options -directory, -model_dir_name or -timestamp, see list of options below. The top directory is by default named ’modelfit_dirX’ where ’X’ is a number that starts at 1 and is increased by one each time you run execute. Execute creates subdirectories where it puts NONMEMs input and output files, to make sure that parallel NONMEM runs do not interfere with each other. It is an nmfe replacement with advanced extra functionality. The execute script is a PsN tool that allows you to run multiple modelfiles either sequentially or in parallel.
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